CCNR

Caenorhabditis elegans and the network control framework—FAQs

Emma K. Towlson, Petra E. Vértes, Gang Yan, Yee Lian Chew, Denise S. Walker, William R. Schafer, and Albert-László Barabási

Phil. Trans. R. Soc. B 373: 20170372

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Predicting Perturbation Patterns from the Topology of Biological Networks

Marc Santolini and Albert-Laszlo Barabasi

PNAS

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Succes In Books: A Big Data Approach to Bestsellers

Burcu Yucesoy, Xindi Wang, Junming Huan, Albert-Laszlo Barabasi

EPJ Data Science 7:7

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Science of Science

Santo Fortunato, Carl T. Bergstrom, Katy Borner, James A. Evans, Dirk Helbing, Stasa Milojevic, Alexander M. Petersen, Filippo Radicchi, Roberta Sinatra, Brian Uzzi, Alessandro Vespignani, Luda Waltman, Dashun Wang, Albert-Laszlo Barabasi

Science 359: 6379 (2018)

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The Fundamental Advantages of Temporal Networks

A. Li, S. P. Cornelius, Y.-Y. Liu, L. Wang, A.-L. Barabasi

Science 358:6366, 1042-1046 (2017).

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Network Control Principles Predict Neuron Function in the Caenorhabditis elegans Connectome

G. Yan, P. E. Vertes, E. K. Towlson, Y. L. Chew, S. Walker, W. R. Schafer, A.-L. Barabasi

Nature 00:000 (2017)

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The Elegant Law that Governs Us All

A.-L. Barabasi

Science 357:6347 (2017)

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Academia Under Fire in Hungary

A.-L. Barabasi

Science 356: 6338 (2017)

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Identifying and modeling the structural discontinuities of human interactions

S. Grauwin, M. Szell, S. Sobolevsky, P. Hovel, F. Simini, M. Vanhoof, Z. Smoreda, A.-L. Barabasi & C. Ratti

Scientific Reports 7: 46677 (2017)

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Integrating Personalized Gene Expression Profiles into Predictive Disease-associated Gene Pools

J. Menche, E. Guney, A. Sharma, P. J. Branigan, M. J. Loza, F. Baribaud, R. Dobrin, A.-L. Barabasi

Systems Biology and Applications 3:10 (2017)

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From Comorbidities of Chronic Obstructive Pulmonary Disease to Identification of Shared Molecular Mechanisms by Data Integration

D. Gomez-Cabrero, J. Menche, C. Vargas, I. Cano, D. Maier, A.-L. Barabasi, J. Tegner, J. Roca (Synergy-COPD Consortia)

BMC Bioinformatics 17: 1291 (2016)

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Quantifying the Evolution of Individual Scientific Impact

R. Sinatra, D. Wang, P. Deville, C. Song, A.-L. Barabasi

Science 4: 354, 6312 (November 2016)

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Controllability of multiplex, multi-time-scale networks

M. Posfai, J. Gao, S. P. Cornelius, A.-L. Barabasi, R. D'Souza

Physical Review E 94: 3, 032316 (2016)

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Control Principles of Complex Systems

Y.-Y. Liu and A.-L. Barabasi

Review of Modern Physics 88: 3, 035006-035064 (2016)

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Control of Fluxes in Metabolic Networks

G. Basler, Z. Nikoloski, A. Larhlimi, A.-L. Barabasi, and Y.-Y. Liu

Genome Research 7: 26, 956-968 (2016)

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Scaling Identity Connects Human Mobility and Social Interactions

P. Deville, C. Song, N. Eagle, V. D. Blondel, A.-L. Barabasi, D. Wang

PNAS 113: 26, 7047-7052 (2016)

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Untangling performance from success

B. Yucesoy, A.-L. Barabási

EPJ Data Science 5 (1), 17

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Controllability Analysis of the Directed Human Protein Interaction Network Identifies Disease Genes and Drug Targets

A. Vinayagama, T.E. Gibsonb, H.-J. Lee, B. Yilmazeld, C. Roeseld, Y. Hua, Y. Kwona, A. Sharma, Y.-Y. Liu, N. Perrimona, A.-L. Barabasi

Proceedings of the National Academy of Sciences 10.1073/pnas.1603992113, 1-6 (2016)

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The Network Behind the Cosmic Web

B.C. Coutinho, S. Hong, K. Albrecht, A. Day, A.-L. Barabasi, P. Torrey, M. Vogelsberger, L. Hernquist

arXiv:1604.03236v2 (13 April 2016)

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Universal resilience patterns in complex networks

J. Gao, B. Barzel, A.-L. Barabási

Nature 530, 307-312 (2016)

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Network-based in silico drug efficacy screening

E. Guney, J. Menche, M. Vidal, A.-L. Barabási

Nature Communications 7:10331, 1-13 (2016)

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Endophenotype Network Models: Common Core of Complex Diseases

S. D. Ghiassian, J. Menche, D. I. Chasman, F. Giulianini, R. Wang, P. Ricchiuto, M. Aikawa, H. Iwata, C. Muller, T. Zeller, A. Sharma, P. Wild, K. Lackner, S. Singh, P. M. Ridker, S. Blankenberg, A.-L. Barabasi, J. Loscalzo

Scientific Reports 6: 27414, 1-13 (2016)

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Tissue Specificity of Human Disease Module

M. Kitsak, A. Sharma, J. Menche, E. Guney, S. D. Ghiassian, J. Loscalzo, A.-L. Barabasi

Scientific Reports 6: 35241 (2016)

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Canonical genetic signatures of the adult human brain

M. Hawrylycz, J. A. Miller, V. Menon, D. Feng, T. Dolbeare, A. L. Guillozet-Bongaarts, A. G. Jegga, B. J. Aronow, C.-K. Lee, A. Bernard, M. F. Glasser, D. L. Dierker, J. Menche, A. Szafer, F. Collman, P. Grange, K. A. Berman, S. Mihalas, Z. Yao, L. Stewart, A.-L. Barabási, J. Schulkin, J. Phillips, L. Ng, C. Dang, D. R. Haynor, A. Jones, D. C. Van Essen, C. Koch, D. Lein

Nature Neuroscience 4171, 1-15 (2015)

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A century of physics

R. Sinatra, P. Deville, M. Szell, D. Wang, A.-L. Barabási

Nature Physics 11, 791-796 (2015)

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Returners and explorers dichotomy in human mobility

L. Pappalardo, F. Simini, S. Rinzivillo, D. Pedreschi, F. Giannotti, A.-L. Barabási

Nature Communications 6:8166, 1-8 (2015)

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Spectrum of controlling and observing complex networks

G. Yan, G. Tsekenis, B. Barzel, J.-J. Slotine, Y.-Y. Liu, A.-L. Barabási

Nature Physics 11, 779-796 (2015)

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Constructing minimal models for complex system dynamics

B. Barzel, Y.-Y. Liu, A.-L. Barabási

Nature Communications 6:7186, 1-8 (2015)

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A DIseAse MOdule Detection (DIAMOnD) Algorithm Derived from a Systematic Analysis of Connectivity Patterns of Disease Proteins in the Human Interactome

S. D. Ghiassian, J. Menche, A.-L. Barabási

PLOS Computational Biology pcbi.1004120, 1-21 (2015)

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Uncovering disease-disease relationships through the incomplete interactome

J. Menche, A. Sharma, M. Kitsak, D. Ghiassian, M. Vidal, J. Loscazlo, A.-L. Barabasi

Science 347:6224, 1257601-1 (2015)

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A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma

A. Sharma, J. Menche, C. C. Huang, T. Ort, X. Zhou, M. Kitsak, N. Sahni, D. Thibault, L. Voung, F. Guo, S. D. Ghiassian, N. Gulbahce, F. Baribaud, J. Tocker, R. Dobrin, E. Barnathan, H. Liu, R. A. Panettieri Jr., K. G. Tantisira, W. Qiu, B. A. Raby, E. K. Silverman, M. Vidal, S. T. Weiss, and A.-L. Barabási

Human Molecular Genetics 101093, 1-16 (2015)

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Destruction perfected

I. A. Kovács, A.-L. Barabási

Nature (News & Views) 524, 38-39 (2015)

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A proteome-scale map of the human interactome network

T. Rolland, M. Tasan, , B. Charloteaux, S. J. Pevzner,, Q. Zhong, N. Sahni, S. Yi,, I. Lemmens, C. Fontanillo,, R. Mosca, A. Kamburov, , S. D. Ghiassian, X. Yang,, L. Ghamsari, D. Balcha,, B. E. Begg, P. Braun, M. Brehm, M. P. Froly, A.-R. Carvunis, D, Convery-Zupan, R. Carominas,, J. Coulombe-Huntington, , E. Dann, M. Dreze, A. Dricot,, C. Fan, E. Franzosa, F. Gebrea, B. J. Gutierrez, M. F. Hardy,, M. Jin, S. Kang, R. Kiros, G. , Lin, K. Luck, A. MacWilliams,, J. Menche, R R. Murray, A., Palagi, M. M. Poulin, X. , Rambout, J. Rasla, P. Reichert, V. Romero, E. Ruyssinck, J. M., Sahalie, plus 20 more co-authors

Cell 159:5, 1212-1226 (2014)

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Collective credit allocation in science

H.-W. Shen, A.-L. Barabasi

Proceedings of the National Academy of Sciences 10.1073/pnas.1401992111, 1-6 (2014)

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A network framework of cultural history

M. Schich, C. Song, Y. Y. Ahn, A. Mirsky, M. Martino, A.-L. Barabási, D. Helbing

Science 345, 558-562 (2014)

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A genetic epidemiology approach to cyber-security

S. Gil, A. Kott, A.-L. Barabási

Scientific Reports 4:5659, 1-7 (2014)

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Human symptoms–disease network

X. Z. Zhou, J. Menche, A.-L. Barabási, A. Sharma

Nature Communications 5:4212, 1-10 (2014)

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Career on the move: Geography, stratification, and scientific impact

P. Deville, D. Wang, R. Sinatra, C. Song, V. Blondel, A.-L. Barabási

Scientific Reports 4, 1-7 (2014)

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A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease

J. Mench, A. Sharma, M. H. Cho, R. J. Mayer, S. I. Rennard, B. Celli, B. E. Miller, N. Locantore, R. Tal-Singer, S. Ghosh, C. Larminie, G. Bradley, J. H. Riley, A. Agusti, E. K. Silverman, A.-L. Barabási

BMC Systems Biology 8, 1-13 (2014)

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Bordering Fiction

Barabasi, A.-L.

Science 343: 6169 (2014)

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Quantifying information flow during emergencies

L. Gao, C. Song, Z. Gao, A.-L. Barabasi, J. P. Bagrow, D. Wang

Scientific Reports 4, 1-6 (2014)

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Modeling and predicting popularity dynamics via reinforced poisson processes

H. Shen, D. Wang, C. Song, A.-L. Barabási

Proceedings of the Twenty-Eighth AAAI Conference on Artificial Intelligence , 291-297 (2014)

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Target control of complex networks

Jianxi Gao, Y.-Y.Liu, R. M. D'Souza, A.-L. Barabási

Nature Communications 5:5415, 1-7 (2014)

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Network-based analysis of genome wide association data provides novel candidate genes for lipid and lipoprotein traits

A. Sharma, N. Gulbahce, S. J. Pevzner, J. Menche, C. Ladenvall, L. Folkdersen, P. Eriksson, M. Orho-Melander, A.-L. Barabási

Molecular & Cellular Proteomics 12, 3398-3408 (2013)

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Uncovering the role of elementary processes in network evolution

G. Ghoshal, L. Chi, A.-L. Barabási

Scientifc Reports 3, 1-8 (2013)

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Quantifying Long-Term Scientific Impact

D. Wang, C. Song, A.-L. Barabási

Science 342, 127-131 (2013)

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Control capacity and a random sampling method in exploring controllability of complex networks

T. Jia, A.-L. Barabási

Scientific Reports 3:2354, 1-6 (2013)

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Network Science

Albert-László Barabási

Philosophical Transactions of The Royal Society 371, 1-3 (2013)

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Observability of complex systems

Y.-Y. Liu, J.-J. Slotine, A.-L. Barabási

Proceedings of the National Academy of Sciences 110, 1-6 (2013)

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Effect of correlations on network controllability

M. Pósfai, Y.-Y. Liu, J.-J. Slotine, A.-L. Barabási

Scientific Reports 3:1067, 1-7 (2013)

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Network link prediction by global silencing of indirect correlations

B. Barzel, A.-L. Barabási

Nature Biotechnology 31: Num 8, 1-8 (2013)

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Emergence of bimodality in controlling complex networks

T. Jia, Y.-Y. Liu, E. Csóka, M. Pósfai, J.-J. Slotine, A.-L. Barabási

Nature Communications 4:2002, 1-6 (2013)

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Universality in network dynamics

B. Barzel, A.-L. Barabási

Nature Physics 9, 673-681 (2013)

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Handful of papers dominates citation

A.-L. Barabási, C. Song, D. Wang

Nature 491, 40 (2012)

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Network science: Luck or reason

Albert-László Barabási

Nature 489, 1-2 (2012)

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Control centrality and hierarchical structure in complex networks

Y.-Y. Liu, J.-J. Slotine, A.-L. Barabasi

PLoS One 7, e44459 (2012)

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Dynamics of ranking processes in complex systems

N. Blumm, G. Ghoshal, Z. Forro, M. Schich, G. Bianconi, J.-P. Bouchard, A.-L. Barabasi

Physical Review Letters 109, 128701:1-5 (2012)

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Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

O. Rozenblatt-Rosen, R. C. Deo, M. Padi, G. Adelmant, T. Rolland, M. Grace, A. Dricot, M. Askenazi, M. Tavares, S. J. Pevzner, F. Abderazzaq, D. Byrdsong, A.-R. Carvunis, A. A. Chen, J. Cheng, M. Correll, M. Durate, C. Fan, M. C. Feltkamp, S. B. Ficarro, R. Franchi, B. K. Garg, N. Gulbahce, T. Hao, A. M. Holthaus, R. James, A. Korkhin, L. Litovchick, J. C. Mar, T. R. Pak, S. Rabello, R. Rubio, Y. Shen, S. Singh, J. M. Spangle, M. Tasan, S. Wanamakter, J. T. Webber, J. Roecklein-Canfield,, E. Johannsen, A.-L. Barabasi,, R. Beroukhim, E. Kieff,, M. E. Cusick, D. E. Hill,, K. Munger, J. A. Marto,, J. Quackenbush, F. P. Roth,, J. A. DeCaprio, M. Vidal

Nature 487, 491-495 (2012)

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A universal model for mobility and migration patterns

Albert-László Barabási

Nature 484, 96-100 (2012)

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Sex differences in intimate relationships

V. Palchykov, K. Kaski, J. Kertesz, A.-L. Barabási, R. Dunbar

Scientific Reports 2:370, 105 (2012)

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Graph theory properties of cellular networks (Chapter 9)

B. Barzel, A. Sharma, A.-L. Barabási

Handbook of Systems Biology – Concepts and Insights (Academic Press, Elsevier) , 177-193 (2013)

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Flavor network and the principles of food pairing

Y.-Y. Ahn, S. E. Ahnert, J. P. Bagrow, A.-L. Barabási

Scientific Reports 196, (2011)

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Systems biology and the future of medicine

J. Loscalzo, A.-L. Barabási

WIREs Systems Biology and Medicine 3, 619-627 (2011)

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Few inputs can reprogram biological networks (reply by Liu et al.)

Y.-Y. Liu, J.-J. Slotine, A.-L. Barabási

Nature 473, 167-173 (2011)

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Human Mobility, Social Ties, and Link Prediction

D. Wang, D. Pedreschi, C. Song, F. Giannotti, A.-L. Barabasi

ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD) , (2011)

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Ranking stability and super-stable nodes in complex networks

G. Ghoshal, A.-L. Barabási

Nature Communications 2, 1-7 (2011)

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Controllability of complex networks

Y.-Y. Liu, J.-J. Slotine, A.-L. Barabási

Nature 473, 167-173 (2011)

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Geographic Constraints on Social Network Groups

J. P. Onnela, S. Arbesman, M. C. Gonzalez, A.-L. Barabasi, N. A. Christakis

PLoS One 6:4, 1-7 (2011)

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Collective response of human populations to large-scale emergencies

J. P. Bagrow, D. Wang, A.-L. Barabasi

PLoS One 6:3, 1-8 (2011)

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Interactome Networks and Human Disease

M. Vidal, M. E. Cusick, A.-L. Barabasi

Cell 144, 986-995 (2011)

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Small but slow world: How network topology and burstiness slow down spreading

M. Karsai, M. Kivelä, R. K. Pan, K. Kaski, J. Kertész, A.-L. Barabási, J. Saramäki

Physical Review E 83, 1-4 (2011)

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Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia

J. J. Kahle, N. Gulbahce, C. A. Shaw, J. Lim, D. E. Hill, A.-L. Barabás, H. Y. Zoghbi

Human Molecular Genetics 20, 510-527 (2011)

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Network medicine: a network-based approach to human disease

A.-L. Barabási, N. Gulbahce, J. Loscalzo

Nature Reviews Genetics 12, 56-68 (2011)

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Information Spreading in Context

D. Wang, Z. Wen, H. Tong, C.-Y. Lin, C. Song, A.-L. Barabási

Proceeding for the 20th International World Wide Web Conference, 2011 , 1-10 (2011)

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Modelling the scaling properties of human mobility

C. Song, Z. Qu, N. Blumm, A.-L. Barabási

Nature Physics 7, 713- (2010)

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Blueprint for antimicrobial hit discovery targeting metabolic networks

Y. Shen, L. Liu, G. Estiu, B. Isin, Y.-Y. Ahn, D.-S. Lee, A.-L. Barabásii, v. Kapatral, O. Wiest, Z. N. Oltvai

Proceedings of the National Academy of Sciences of the United States of America 10.1073, 1-6 (2010)

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Cancer metastasis networks and the prediction of progression patterns

L. L. Chen, N. Blumm, N. A. Christakis, A.-L. Barabási, T. S. Deisboeck

British Journal of Cancer 101, 749-758 (2009)

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Comparative Genome-Scale Metabolic Reconstruction and Flux Balance Analysis of Multiple Staphylococcus aureus Genomes Identify Novel Antimicrobial Drug Targets

D.-S. Lee, H. Burd, J. Liu, E. Almass, O. Weist, A.-L. Barabási, Z. N. Oltvai, V. Kapatra

Journal of Bacteriology 191:12, 4015–4024 (2009)

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Understanding the spreading patterns of mobile phone viruses

P. Wang, M. Gonzalez, C. A. Hidalgo, A.-L. Barabási

Science 324, 1071-1076 (2009)

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A dynamic network approach for the study of human phenotypes

C. A. Hidalgo, N. Blumm, A.-L. Barabási, N. A. Christakis

PLoS Computational Biology 5:4, 1-11 (2009)

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The impact of cellular networks on disease comorbidity

J. Park, D. S. Lee, N. A. Christakis, A.-L. Barabási

Molecular Systems Biology 5:262, 1-7 (2009)

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Computation Social Science

D. Lazer, A. Pentland, L. Adamic, S. Aral, A.-L. Barabási, D. Brewer, N. Christakis, N. Contractor, J. Fowler, M. Gutmann, T. Jebara, G. King, M. Macy, D. Roy, M. Van Alstyne

Science 323, 721-724 (2009)

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Time to CARE: a collaborative engine for practical disease prediction

D. A. Davis, N. V. Chawla, N. A. Christakis, A.-L. Barabasi

Data Mining and Knowledge Discovery 30:3, 388-41 (2009)

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Impact of Limited Solvent Capacity on Metabolic Rate, Enzyme Activities, and Metabolite Concentrations of S.cerevisiae Glycolysis

A. Vazquez, M. A. de Menezes, A.-L. Barabási, Z. N. Oltvai

PLoS Computational Biology 4:10, 1-6 (2008)

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High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

H. Yu, P. Braun, M. A. Yildirim, I. Lemmens, K. Venkatesan, J. Sahalie, T. Hirozane-Kishikawa, F. Gebreab, N. Li, N. Simonis, T. Hao, J.-F. Raul, A. Dricot, A. Vazquez, R. R. Murray, C. Simon, L. Tardivo, S. Tam, N. Svrzikapa, C. Fan, A.-S. de Semt, A. Motyl, M. E. Hudson, J. Park, X. Xin, M. E. Cusick, T. Moore, C. Boone, M. Snyder, F. P. Roth, A.-L. Barabási, J. Tavernier, D. E. Hill, M. Vidal

Science 322, 104-110 (2008)

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